PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_116574g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family RAV
Protein Properties Length: 340aa    MW: 38652.6 Da    PI: 9.4893
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_116574g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.4e-123583155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykGV   + +grW A+I++      ++r +lg+f  +e+Aa+a+++a+ k++g
  MA_116574g0010 35 SQYKGVVPQP-NGRWGAQIYEK-----HQRLWLGTFNREEDAARAYDRAAIKFRG 83
                    78****9888.8*********3.....5************************997 PP

2B3100.69e-32151255199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+ tpsdv+k++rlv+pk++ae++       gg+k ++++l +ed + ++W++ ++y+k+s++yvltkGW+++vk+++L++gD+v+F++++  
  MA_116574g0010 151 FDKAVTPSDVGKLNRLVIPKQYAEKYfpldeasGGDKGKGIMLNFEDNNYKTWRFHYSYWKSSQSYVLTKGWSHYVKEKRLQAGDIVTFERSS-P 244
                     89*******************************9999*****************************************************655.8 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+++++r+
  MA_116574g0010 245 SRRLFITFRRR 255
                     88899999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-183591IPR016177DNA-binding domain
CDDcd000185.15E-153590No hitNo description
Gene3DG3DSA:3.30.730.104.1E-213691IPR001471AP2/ERF domain
PfamPF008472.4E-73683IPR001471AP2/ERF domain
SMARTSM003807.9E-293697IPR001471AP2/ERF domain
PROSITE profilePS5103220.0473691IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.7E-39145254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-31146255IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-27149254No hitNo description
SMARTSM010192.6E-23151256IPR003340B3 DNA binding domain
PfamPF023628.1E-29151255IPR003340B3 DNA binding domain
PROSITE profilePS5086313.987151255IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGSGTSTVSS ENIHSYAPPS AQGEQEKSCK KLPSSQYKGV VPQPNGRWGA QIYEKHQRLW  60
LGTFNREEDA ARAYDRAAIK FRGVDAVTNF NLVETHPEAI FLRGRSTDEI VDMLRRHTYE  120
EELQNNDTTC SSAAYPDIAC STPTEPREHM FDKAVTPSDV GKLNRLVIPK QYAEKYFPLD  180
EASGGDKGKG IMLNFEDNNY KTWRFHYSYW KSSQSYVLTK GWSHYVKEKR LQAGDIVTFE  240
RSSPSRRLFI TFRRRPFSLI SAATRPPTAL LSYLCCYPTA ATQTLPAFRQ SLCSEWVSAP  300
GSPFLQAAAI GHRPRRPLFD SLRRQTQFSR LLADPQVCLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4114826311125DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002979064.11e-100hypothetical protein SELMODRAFT_110104, partial
SwissprotQ9LS062e-95RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A0D6QRH41e-112A0A0D6QRH4_ARACU; Uncharacterized protein
STRINGEFJ200212e-99(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.14e-88ethylene response DNA binding factor 3